Extracting drug-drug interactions from biomedical texts
نویسندگان
چکیده
منابع مشابه
SemEval-2013 Task 9 : Extraction of Drug-Drug Interactions from Biomedical Texts (DDIExtraction 2013)
The DDIExtraction 2013 task concerns the recognition of drugs and extraction of drugdrug interactions that appear in biomedical literature. We propose two subtasks for the DDIExtraction 2013 Shared Task challenge: 1) the recognition and classification of drug names and 2) the extraction and classification of their interactions. Both subtasks have been very successful in participation and result...
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We propose a novel attention mechanism for a Convolutional Neural Network (CNN)-based Drug-Drug Interaction (DDI) extraction model. CNNs have been shown to have a great potential on DDI extraction tasks; however, attention mechanisms, which emphasize important words in the sentence of a target-entity pair, have not been investigated with the CNNs despite the fact that attention mechanisms are s...
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Extracting adverse drug events receives much research attention in the biomedical community. Previous work adopts pipeline models, firstly recognizing drug/disease entity mentions and then identifying adverse drug events from drug/disease pairs. In this paper, we investigate joint models for simultaneously extracting drugs, diseases and adverse drug events. Compared with pipeline models, joint ...
متن کاملDrug-Drug Interaction Extraction from Biomedical Texts with SVM and RLS Classifiers
We introduce a system developed to extract drug-drug interactions (DDI) for drug mention pairs found in biomedical texts. This system was developed for the DDI Extraction First Challenge Task 2011 and is based on our publicly available Turku Event Extraction System, which we adapt for the domain of drug-drug interactions. This system relies heavily on deep syntactic parsing to build a represent...
متن کاملAn Experimental Exploration of Drug-drug Interaction Extraction from Biomedical Texts
The First Challenge of Drug-Drug Interaction Extraction (DDIExtraction 2011) involves doing a binary DDI detection to determine whether a drug pair in a given sentence (with annotated drug names) has interaction information. This may be the first attempt at extraction of drug interaction information in wide community. In this paper we compare and evaluate the effectiveness of different strategi...
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ژورنال
عنوان ژورنال: BMC Bioinformatics
سال: 2010
ISSN: 1471-2105
DOI: 10.1186/1471-2105-11-s5-p9